Glyma09g31740 - SoyBase

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Report for Sequence Feature Glyma09g31740

Feature Type:	gene_model
Chromosome:	Gm09
Start:	38382762
stop:	38383979
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g31740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00257	PFAM	Dehydrin	JGI		ISS
UniRef100_Q39805	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dehydrin-like protein n=3 Tax=Glycine RepID=Q39805_SOYBN	SoyBase	E_val: 3.00E-151	ISS
UniRef100_Q39805	UniRef	Annotation by Michelle Graham. Best UniRef hit: Dehydrin-like protein n=3 Tax=Glycine RepID=Q39805_SOYBN	SoyBase	E_val: 3.00E-151	ISS

Expression Patterns of Glyma09g31740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g31740

Paralog	Evidence	Comments
Glyma07g10030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g31740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g185500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g31740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g31740

Limit To All Plant Sequences

>Glyma09g31740.2   sequence type=CDS   gene model=Glyma09g31740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGCATGCATCTTTCATCATCCAACATCACACACAACTACTACAAGTACTTCCTTACAATCAAAACCAACAACAACTATGGCAAGTTATCAAAAGCACTACGATGATCAGGGTCGCAAGGTTGACGAGTATGGCAACGTTGAGAAGCAAACCGACGAATACGGCAACCCTGTTCATGCTGCTAGTGTCACCTATGTAGCCACCAGAACTGCTGCTGGTGGTTACAGTGATGACATTAATAAGCAACATGATACCACCAATGCCTACGGCGTAGACACTGGTAGACAGCATTCTAGTGGTGGCTACGATGGTGACACTAATAAACATCATGGAACTACTGGTGGCTATAATGATGACACCAATAGACATCATGGAACTACCGGTGTCTATGGTATAGACACCGATAGGCAACAACATGGGACTACTGGTGGCTATGCCGGTGACACTGGTAGGCAACATGGGAACATCGGTGGCCCTTACTATGGAACCAACACCGCAGACACCGGTACTGGTCCCAGAAGTGGAACCACGGGCGGCACCGGTTATGGAGGCACTGGTGGCACTGATTATGGAACAACTGGTGGCACTGGTTATGGAAGTGGAACTGGGTATGGAGTCAACACTGGGGGTGCGCACACTGAAGCAGGATATAGGAAGGAACATCGTCAGCATGACCAATCTCATGGTGATCAGAACGAGAAGAAAGGGATTATGGACAAGATTAAGGAGAAGCTTCCTGGAGGACACAGTGACAAGTAG

Predicted protein sequences of Glyma09g31740

Limit To All Plant Sequences

>Glyma09g31740.2   sequence type=predicted peptide   gene model=Glyma09g31740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLACIFHHPTSHTTTTSTSLQSKPTTTMASYQKHYDDQGRKVDEYGNVEKQTDEYGNPVHAASVTYVATRTAAGGYSDDINKQHDTTNAYGVDTGRQHSSGGYDGDTNKHHGTTGGYNDDTNRHHGTTGVYGIDTDRQQHGTTGGYAGDTGRQHGNIGGPYYGTNTADTGTGPRSGTTGGTGYGGTGGTDYGTTGGTGYGSGTGYGVNTGGAHTEAGYRKEHRQHDQSHGDQNEKKGIMDKIKEKLPGGHSDK*

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